PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10001224m
Common NameCICLE_v10001224mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 431aa    MW: 47468.4 Da    PI: 9.9884
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10001224mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.00022199221223
                      EETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      +Cp Cg+ F   ++L+ H+ + H
  Ciclev10001224m 199 SCPECGQIFMKAETLELHQAVrH 221
                      8******************9888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.016198226IPR007087Zinc finger, C2H2
PROSITE patternPS000280198221IPR007087Zinc finger, C2H2
SuperFamilySSF563991.92E-26223429No hitNo description
Gene3DG3DSA:3.90.228.105.5E-18224428IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MAKPRNQRKH LTEMQQSKKN QPQKSERPPP SWAAVRGIFT CKNLQAPQQQ QKKPEQHQQQ  60
EKKQKQKQQQ DQATDETSKK CKKMKCSGSL CSNTKVMQRP EAAASPELQR KRASMGSSGK  120
NESSSRSMKT PLYELNGANG VISSTNSSLS VSSNSSIAGG GSFRGMPFRR LSGCYECRMV  180
VDPVLGFARD PSLRGSICSC PECGQIFMKA ETLELHQAVR HAVSELGPED TSKNIVEIIF  240
QSSWLKKQTP ICKIDRILKV HNTQRTIAKF EEYRDSIKAK ATKLPKKHPR CIADGNELLR  300
FHCTTFTCSL GLNGSSNLCN SIPQCNVCSI IKNGFKVTQE TNKGLRGNGI LTTATSGKAH  360
DKAGVEDGSD ARAMLVCRVI AGRVKKSMEG NLEEYDSVAG AMGMYSNLDE LYVFNPKAIL  420
PCFVVIYSGF *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006434130.10.0hypothetical protein CICLE_v10001224mg
TrEMBLV4T7C60.0V4T7C6_9R
STRINGPOPTR_0005s16070.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19162880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-104C2H2-like zinc finger protein